Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015909948.1_cds_XP_016460043.1_53504
CDS Infomation

[gene=LOC107783571] [db_xref=GeneID:107783571] [protein=putative late blight resistance protein homolog R1C-3] [protein_id=XP_016460043.1] [location=join(9380..11307,11404..12505)] [gbkey=CDS]
Sequence

ATGAATGCTTTGCTTTCTGATCACCTGCGAATGAGGATTAAGCCTATTGAGCCAAGTATC
CGCAAGATCTACGTTGATGTTCTGCAAGCTTTAAAGTCAACATCACAATCAGGATGGCGT
CCCGATATCCAAAATGAGAATACAACAAACAGTGAAACTGCCTTTTTGGAGACTGTCCTG
CACAACTTGGTGGAGCTGCCAACAATTGGTAATGCTACAGTTGCTTTGAAAGATGAAACA
TCAAACCTTCAGGAGATGCTCAACTTCTTGCGAGCCAATCTCCCCTGTATTGAATCTCAT
TTTGAAGATCTCCACATTATGATTATTGATGCTGGAATTCTAGTTTACTCGTTGTATGAT
GTTGCATCGGCCAAAGTGAGCCAAGCACTTCTTGATTTTCCCGGAAACATTCAGCATTTC
AACACTCTGGTTTATCCCATAGTTCAGAAGGTATTCCAATCTAATTTGCCACGGATTCAT
GGAATAGGCTATGTTGATTTCCTTTTAAGCAACCTGAATGAGTTTCAAGGTCGTTATTCA
AAGTCACTTGTTTCTATCAAGAACCAACTTCAAATAATTCAGAAGGAACTTGAGAGCGTG
CAACCTTTTCTCAAGGATGTTGCAAAAGAGCTACATAAGCACCACCAAATTCAACATTTG
GCTCAGTTAGTGATTGGCACAGCATATGAAGTTGAATATATAGTCGATTCTTTTATCAGC
AAAGAAGTTCCCGAGTGCTGTCTTGAGCGTTGGCTCGTTGATATCATAGAGGAAATTGAA
CTTAACAGTGCAAAAATAGATATTGAATTGAAGAAAACACCTGCAGTTGACATAGCATTA
CATGATCCCGTGGATGCAGCCGCTGCTCATACATCATCAGAATCTACGTCCCCAAAGAAT
GAAGAAATCGTGGGCTTTGATCATATCATTTCAGAATTAAGAAAGAAGCTAACTAAAGGA
TCCCAACAGCTAGACGTCATCTCGATTGTCGGCATGGGCGGACAAGGTAAGACGACATTG
GCCAACAAACTCTTTAATGATGACTCAGTTAAATCTCGATTTGATAGTCGGGCGCAATGT
TGCGTGTCGCAAGAGTATTCCTGTAGGTCCATTTTATTGGCCATTTTACGTGATCTTTCT
TGTGATGACCCTGCTACTAGTGAGTTGTCTACTGAAGATCTACGAGATAAGCTTCAAAAA
GTTTGTAAAGTGAAAAGATATCTTATCCTTATCGATGACATTTGGGAAGCTAGTGTGTGG
GAAGATTTACAGCCTTGCTTTGCGGATGTTAAAAACGGAAGTCGAATTATTCTAACAACA
CGACAAGTTGAAGTTGCCAACTCAGCTAGAATTTCTTGTGAGCCCTTTCATCTTCCTATG
TTTAAGGAAGATGAAAGTTGGAAATTGCTGAAAGTGAAAGTGTTTGGTAAAGAAGGATGC
TCTCCTGATCTTGAAAAAGTTGGGCTAGAAATAGCAAAGAAGTGCGCAGGGCTGCCTCTT
TCAATTGTTTTGGTGGCTGGTATTCTCGCAAAGGAAAAGAATGAACGATATTGGAGACAA
GTCGCTAAGAATTTAGGTTCCCACATTCAAAGTGACGCAAAGGCTGTAATAGAGCACAGT
TATAAACATTTACCCCATCATTTAAAGCCTTGCTTCCTTTATTTTGGAGCATTTTCAGAA
GACAAGACGATCAATGTTTCAGACTTGACATGCTTATGGATCGCAGAAGGATTCATAAAA
ATTGATAAAGAGAAGAGTTTGGAGGATGTAGCATCAGATTACTTGGAGAATCTTATTGGA
CGAAATCTAGTGAAAATTGCAAAAAGGAGTTCTGATGGCAAGGTCAAAGCATGCCAGATC
CATGATCTATTACTTGATTTCTGCAAGGAAACAGCTGAGCAGGAAAAGCTTCTACTCTGC
ATAGATAGGTACCAAAGTGCCAATCCTCCACCTGGCATTTACTCACACCGGCAGCTAGCT
CAACGTCGCCTGTCCATTTATGCTGACAAGAATTATCTTGCAAAATGGAGTTCGTCTTGC
TCACTTGTTGGGTCTGTACTTTGCAGGGATGATATCATAGAATACCTCTCTCCAACCTCG
CGCATCTTTCAGAAATTCAAGTTTCTAAAAGTGTTGGATCTGAGGTTCATTGTTGTTGAT
TCTTTCCCAACAGAGCTGTTTTATTTGAGGTATTTTGCAGTACGAACTGCGAAGAAGTCA
ATTACATCATGCATAAGTAATCTATGGAACCTTGGGACTTTGATAGTCATAGGGGAAGGG
ACAGACTTGTCACTACCGTTTACACTCTGGAAGATGTCTAAATTGAGAATTCTGCATATT
TGTGACAATGCTTATTTCACCATTAGTGGTGCAGAAGAATTACTTGAGAACTCCTCCAAT
CTTGACAATTTGGAGACTCTTTCCTGTCCATGTTTTTCTTGTGCGGAGGATGCAGAATTT
GTATTGGGAAAGATGCCAAATATTCGGAATCTGAGATGCTCAATTAAGTATCCTAAAGGA
AACTTTTGGGTCCTTCAATTGGAATTTCTAGCACAGCTTAAGACGCTCAAGGTTCATTTT
GACGTGCATTCAGCCATAGCTGGTGCTTACATCTTCCCCTCAAGTCTCAACAAATTGACT
TTGTCCACCATTTCCTGGGGCACTGGTTCAGAGATTGCTATGCTTCCCAATCTTCAGGTA
CTTAAACTGGTAAATGTTAAGTTTGATAAACGCGAATGGACAGTGAACGACAATGAGTTC
CCTAAACTCAAAGTCTTGAAAGTAGTAAACTCTGATAATTTTAAGGAGTGGAATGTCTTG
GATGATGCCTTTCCTTGTCTTGAACATTTGACATTGCATAAATGCCAATATCTTAAGGAG
ATCCCCTCTTGGTTCGCGGAAATCGCTTCTCTCAAGTTTGTTAGGGTAAGGTCTTGCAAT
GTAGCAGCTCTTGTTGCTTCACTCAAGGAGATCAGGACAATGCAAGTTGAAGATTACCAA
AGATCTGAATTCCAGATCATCTTTGGCTAG

Peptide Sequence

PEP ID

XP_016460043.1
PEP Infomation

PREDICTED: putative late blight resistance protein homolog R1C-3 [Nicotiana tabacum]
Sequence

MNALLSDHLRMRIKPIEPSIRKIYVDVLQALKSTSQSGWRPDIQNENTTNSETAFLETVL
HNLVELPTIGNATVALKDETSNLQEMLNFLRANLPCIESHFEDLHIMIIDAGILVYSLYD
VASAKVSQALLDFPGNIQHFNTLVYPIVQKVFQSNLPRIHGIGYVDFLLSNLNEFQGRYS
KSLVSIKNQLQIIQKELESVQPFLKDVAKELHKHHQIQHLAQLVIGTAYEVEYIVDSFIS
KEVPECCLERWLVDIIEEIELNSAKIDIELKKTPAVDIALHDPVDAAAAHTSSESTSPKN
EEIVGFDHIISELRKKLTKGSQQLDVISIVGMGGQGKTTLANKLFNDDSVKSRFDSRAQC
CVSQEYSCRSILLAILRDLSCDDPATSELSTEDLRDKLQKVCKVKRYLILIDDIWEASVW
EDLQPCFADVKNGSRIILTTRQVEVANSARISCEPFHLPMFKEDESWKLLKVKVFGKEGC
SPDLEKVGLEIAKKCAGLPLSIVLVAGILAKEKNERYWRQVAKNLGSHIQSDAKAVIEHS
YKHLPHHLKPCFLYFGAFSEDKTINVSDLTCLWIAEGFIKIDKEKSLEDVASDYLENLIG
RNLVKIAKRSSDGKVKACQIHDLLLDFCKETAEQEKLLLCIDRYQSANPPPGIYSHRQLA
QRRLSIYADKNYLAKWSSSCSLVGSVLCRDDIIEYLSPTSRIFQKFKFLKVLDLRFIVVD
SFPTELFYLRYFAVRTAKKSITSCISNLWNLGTLIVIGEGTDLSLPFTLWKMSKLRILHI
CDNAYFTISGAEELLENSSNLDNLETLSCPCFSCAEDAEFVLGKMPNIRNLRCSIKYPKG
NFWVLQLEFLAQLKTLKVHFDVHSAIAGAYIFPSSLNKLTLSTISWGTGSEIAMLPNLQV
LKLVNVKFDKREWTVNDNEFPKLKVLKVVNSDNFKEWNVLDDAFPCLEHLTLHKCQYLKE
IPSWFAEIASLKFVRVRSCNVAALVASLKEIRTMQVEDYQRSEFQIIFG

Transcript Sequence

Gene sequence data has not been registered.